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Bioinformatics Advance Access published online on April 15, 2004
Bioinformatics, doi:10.1093/bioinformatics/bth260
Bioinformatics © Oxford University Press 2004; all rights reserved
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Received January 28, 2004
Revised February 25, 2004
Accepted February 27, 2004

Applications note

The SRS 3D module: integrating structures, sequences, and features

Seán I. O'Donoghue 1*, Joachim E. W. Meyer 1, Andrea Schafferhans 1, Karsten Fries 1

1 LION Bioscience AG, Waldhofer Str. 98, 69123 Heidelberg, Germany

* To whom correspondence should be addressed. E-mail: contact{at}lionbioscience.com.


  Abstract

Summary: In this paper we present SRS 3D, a new service that allows users to easily and rapidly find all related structures for a given target sequence; structures can then be viewed together with sequences, alignments, and sequence features (currently from UniProt, InterPro, and PDB). Extensive user feedback confirms that SRS 3D is intuitive and useful especially for those not expert in structures.

Availability: An SRS 3D server is provided at http://srs3d.ebi.ac.uk/.

Supplementary Information: Complete documentation is available (click the ‘Help’ button after login). Product information is at http://www.lionbioscience.com/solutions/products/srs/srs-3d.


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