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Bioinformatics Advance Access published online on May 6, 2004
Bioinformatics, doi:10.1093/bioinformatics/bth300
Bioinformatics © Oxford University Press 2004; all rights reserved
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Received March 9, 2004
Revised April 12, 2004
Accepted April 21, 2004

Applications note

TargetDB: a target registration database for structural genomics projects

Li Chen 1, Rose Oughtred 1, Helen M. Berman 1*, John Westbrook 1

1 Research Collaboratory for Structural Bioinformatics, Protein Data Bank (RCSB PDB), Department of Chemistry and Chemical Biology, Rutgers, The State University of New Jersey, 610 Taylor Road, Piscataway, NJ 08854

* To whom correspondence should be addressed. E-mail: berman{at}rcsb.rutgers.edu.


  Abstract

Summary: TargetDB is a centralized target registration database that includes protein target data from the NIH structural genomics centers and a number of international sites. TargetDB, which is hosted by the Protein Data Bank (RCSB PDB), provides status information on target sequences and tracks their progress through the various stages of protein production and structure determination. A simple search form permits queries based on contributing site, target ID, protein name, sequence, status and other data. The progress of individual targets or entire structural genomics projects may be tracked over time and target data from all contributing centers may also be downloaded in XML format.

Availability: TagetDB is available at http://targetdb.pdb.org/.


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