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Bioinformatics Advance Access published online on May 6, 2004
Bioinformatics, doi:10.1093/bioinformatics/bth301
Bioinformatics © Oxford University Press 2004; all rights reserved
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Received March 10, 2004
Revised April 15, 2004
Accepted April 21, 2004

Applications note

Heterogeneity detector: finding heterogeneous positions in Phred/Phrap assemblies

W. H. Lee 1* V. B. Vega 1

1 Genome Institute of Singapore

* To whom correspondence should be addressed. E-mail: leewhc{at}gis.a-star.edu.sg.


  Abstract

Summary: A modification to phred and program to detect heterogeneous positions, which is particularly useful in the identification of mutations and other abnormalities in phred/phrap genome assemblies.

Availability: The package is made available at http://giscompute.gis.a-star.edu.sg/~charlie/DHetero.html.


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