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Bioinformatics Advance Access published online on July 15, 2004
Bioinformatics, doi:10.1093/bioinformatics/bth396
Bioinformatics © Oxford University Press 2004; all rights reserved
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Received March 1, 2004
Revised May 17, 2004
Accepted June 29, 2004

Applications note

Importing MAGE-ML format microarray data into BioConductor

Steffen Durincky 1*, Joke Allemeerschy 1*, Vincent J. Carey 2, Yves Moreau 3, Bart De Moor 1

1 Department of Electronical Engineering, ESAT-SCD, K.U.Leuven, Kasteelpark Arenberg 10, 3001, Leuven-Heverlee, Belgium
2 Channing Laboratory, Brigham and Women's Hospital, 75 Francis Street, Boston, 02115, USA
3 Department of Electronical Engineering, ESAT-SCD, K.U.Leuven, Kasteelpark Arenberg 10, 3001, Leuven-Heverlee, Belgium; Center for Biological Sequence Analysis, BioCentrum, Technical University of Denmark, Kemitorvet, Building 208, 2800, Lyngby, Denmark

* To whom correspondence should be addressed. E-mail: joke.allemeersch{at}esat.kuleuven.ac.be.


  Abstract

The microarray gene expression markup language (MAGE-ML) is a widely used XML (eXtensible Markup Language) standard for describing and exchanging information about microarray experiments. It can describe microarray designs, microarray experiment designs, gene expression data, and data analysis results. We describe RMAGEML, a new Bioconductor package that provides a link between cDNA microarray data stored in MAGE-ML format and the Bioconductor framework for preprocessing, visualization, and analysis of microarray experiments.

Availability: http://www.bioconductor.org. Open Source.


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