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Bioinformatics Advance Access published online on July 15, 2004
Bioinformatics, doi:10.1093/bioinformatics/bth406
Bioinformatics © Oxford University Press 2004; all rights reserved
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Received March 22, 2004
Revised July 2, 2004
Accepted July 6, 2004

Applications note

Interactive gene-order comparison for multiple small genomes

Aaron Kaluszka 1 Cynthia Gibas 1*

1 Department of Biology, College of Science, Virginia Polytechnic Institute & State University, Blacksburg, VA, 24061, USA

* To whom correspondence should be addressed. E-mail: cgibas{at}vt.edu.


  Abstract

Summary: Genome Organization Analysis Tool (GOAT) is a program that performs comparative sequence analysis on ordered gene lists from annotated genomes, provides visual and tabular output, and provides means of accessing and analyzing related gene sequence data, for the purpose of comparing genome organization at the gene order level. GOAT can be used to compare any two or more genomes or chromosomes on demand, or configured to provide access to precomputed comparisons of a specific group of genome sequences.

Availability: Demonstration web server and software download, subject to the Virginia Tech Noncommercial License, at http://gaia.biotech.vt.edu/goat/.

Supplementary information: Updates, installation and configuration information are available at http://gaia.biotech.vt.edu/goat.


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