Bioinformatics Advance Access published online on August 5, 2004
Bioinformatics, doi:10.1093/bioinformatics/bth456
Bioinformatics © Oxford University Press 2004; all rights reserved
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1 Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305-5120, USA
* To whom correspondence should be addressed. E-mail: sherlock{at}genome.stanford.edu.
Summary: GO::TermFinder comprises a set of object-oriented Perl modules for accessing Gene Ontology (GO) information and evaluating and visualizing the collective annotation of a list of genes to GO terms. It can be used to draw conclusions from microarray and other biological data, calculating the statistical significance of each annotation. GO::TermFinder can be used on any system on which Perl can be run, either as a command line application, in single or batch mode, or as a web-based CGI script. Availability: The full source code and documentation for GO::TermFinder is freely available from http://search.cpan.org/dist/GO-TermFinder/.
Revised May 10, 2004
Accepted June 29, 2004
Article
GO::TermFinder - open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes
2 Department of Biochemistry, Stanford University School of Medicine, Stanford, California 94305-5307, USA
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W. Wang, J. M. Cherry, Y. Nochomovitz, E. Jolly, D. Botstein, and H. Li Inference of combinatorial regulation in yeast transcriptional networks: A case study of sporulation PNAS, February 8, 2005; 102(6): 1998 - 2003. [Abstract] [Full Text] [PDF]
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