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Bioinformatics Advance Access published online on September 3, 2004
Bioinformatics, doi:10.1093/bioinformatics/bti002
Bioinformatics © Oxford University Press 2004; all rights reserved
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Received May 13, 2004
Revised August 4, 2004
Accepted August 23, 2004

Applications note

BarleyExpress: a web-based submission tool for enriched microarray database annotations

Xiaoyun Tang 1, Lishuang Shen 2, and Julie A. Dickerson 1*

1 Electrical and Computer Engineering Department, Iowa State University, Ames, IA, 50011-3060, USA
2 Virtual Reality Applications Center, Iowa State University, Ames, IA, 50011-2274, USA

* To whom correspondence should be addressed. E-mail: julied{at}iastate.edu.


  Abstract

Summary: BarleyExpress is a web-based microarray experiment data submission tool for BarleyBase, a public data resource of Affymetrix GeneChip® data for cereals. BarleyExpress uses the Plant Ontology vocabularies and enhances the MIAME guidelines to standardize the annotation of microarray gene expression experiments. BarleyExpress also provides explicit support for factorial experiment design and template loading methods to ease the submission process for large experiments.

Availability: http://barleybase.org.

Supplementary Information: BarleyExpress Users Manual.


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