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Bioinformatics Advance Access published online on September 9, 2004
Bioinformatics, doi:10.1093/bioinformatics/bti016
Bioinformatics © Oxford University Press 2004; all rights reserved
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Received July 15, 2004
Revised September 1, 2004
Accepted September 2, 2004

Applications note

VizRank: finding informative data projections in functional genomics by machine learning

Gregor Leban 1, Ivan Bratko 2, Uros Petrovic 3, Tomaz Curk 1, and Blaz Zupan 4*

1 University of Ljubljana, Faculty of Computer and Information Science, Ljubljana, Slovenia
2 University of Ljubljana, Faculty of Computer and Information Science, Ljubljana, Slovenia; Jozef Stefan Institute, Ljubljana, Slovenia
3 Jozef Stefan Institute, Ljubljana, Slovenia
4 University of Ljubljana, Faculty of Computer and Information Science, Ljubljana, Slovenia; Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, USA

* To whom correspondence should be addressed. E-mail: blaz.zupan{at}fri.uni-lj.si.


  Abstract

Summary: VizRank is a tool that finds interesting two-dimensional projections of class-labeled data. When applied to multi-dimensional functional genomics data sets, VizRank can systematically find relevant biological patterns.

Availability: http://www.ailab.si/supp/bi-vizrank.

Supplementary information: http://www.ailab.si/supp/bi-vizrank.


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