Bioinformatics Advance Access published online on October 27, 2004
Bioinformatics, doi:10.1093/bioinformatics/bti079
Bioinformatics © Oxford University Press 2004; all rights reserved
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1 Antiviral Research Center, University of California San Diego, San Diego, California, 92103
* To whom correspondence should be addressed.
Summary: The HyPhy package is designed to provide a flexible and unified platform for carrying out likelihood-based analyses on multiple alignments of molecular sequence data, with the emphasis on studies of rates and patterns of sequence evolution. Availability: http://www.hyphy.org. Additional Information: HyPhy documentation and tutorials are available at http://www.hyphy.org.
Revised September 14, 2004
Accepted October 1, 2004
Applications note
HyPhy: hypothesis testing using phylogenies
2 Bioinformatics Research Center, North Carolina State University, Raleigh NC, 27695-7566
Spencer V. Muse, E-mail: muse{at}stat.ncsu.edu
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