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Bioinformatics Advance Access published online on November 5, 2004
Bioinformatics, doi:10.1093/bioinformatics/bti120
Bioinformatics © Oxford University Press 2004; all rights reserved
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Received July 16, 2004
Accepted October 20, 2004

Applications note

A Java tool for dynamic web-based 3D visualization of anatomy and overlapping gene or protein expression patterns

Victor E. Gerth 1 and Peter D. Vize 2*

1 Department of Biological Science, University of Calgary, Alberta T2N 1N4, Canada
2 Department of Biological Science, University of Calgary, Alberta T2N 1N4, Canada; Department of Biochemistry & Molecular Biology, University of Calgary, Alberta T2N 1N4, Canada

* To whom correspondence should be addressed.
Peter D. Vize, E-mail: pvize{at}ucalgary.ca


  Abstract

Summary: The Gene Expression Viewer is a web launched three dimensional visualization tool, tailored to comparing surface reconstructions of multi-channel image volumes generated by confocal microscopy or micro-CT.

Availability: Software is available on request from the authors and is free to academics.

Supplementary information: Revisions and additional documentation to the Gene Expression Viewer are maintained at http://www.cbrbio.ucalgary.ca/3DModels and http://www.xenbase.org/3DModels.

The idx3dIII Advanced Programming Interface is freely available for non-commercial use at http://www.idx3d.ch/idx3d/idx3d.html.


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