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Bioinformatics Advance Access published online on November 16, 2004
Bioinformatics, doi:10.1093/bioinformatics/bti143
Bioinformatics © Oxford University Press 2004; all rights reserved
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Received November 17, 2003
Revised April 18, 2004
Accepted April 22, 2004

Applications note

Grid Cellware: the first grid-enabled tool for modeling and simulating cellular processes

Pawan Dhar 1*, Tan Chee Meng 1, Sandeep Somani 1, Li Ye 1, Kishore Sakharkar 1, Arun Krishnan 1, Azmi B. M. Ridwan 1, Mandar Chitre 1, and Zhu Hao 1

1 Systems Biology Group, Bioinformatics Institute, 30 Biopolis Street, #07-01, Matrix, Singapore 138671

* To whom correspondence should be addressed.
Pawan Dhar, E-mail: pk{at}bii-sg.org


  Abstract

Summary: Modeling and simulation of complex cellular transactions involves development of platforms that understand diverse mathematical representations and are capable of handling large backend computations. Grid-Cellware, an integrated modelling and simulation tool, has been developed to precisely address these niche requirements of the modelling community. Grid-Cellware implements various pathway simulation algorithms along with adaptive swarm algorithm for parameter estimation. For enchanced computational productivity Grid-Cellware uses Grid technology with Globus as the middleware.

Availability: https://www.bii-sg.org/sbg/cellware.

Supplementary Information: User Manual is available as PDF file. Examples are attached to expedite mastering of the software.


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