Bioinformatics Advance Access published online on November 30, 2004
Bioinformatics, doi:10.1093/bioinformatics/bti172
Bioinformatics © Oxford University Press 2004; all rights reserved
1 Department of Biomedical Informatics, The Ohio State University, 3184 Graves Hall, 333 W. 10th Ave., Columbus, Ohio 43210, USA
* To whom correspondence should be addressed.
Revised November 3, 2004
Accepted November 20, 2004
Discovery note
Synergy of human Pol II core promoter elements revealed by statistical sequence analysis
Ilya P. Ioshikhes, E-mail: ioschikhes-1{at}medctr.osu.edu
![]()
CiteULike
Connotea
Del.icio.us What's this?
This article has been cited by other articles:
![]() |
K. Gazit, S. Moshonov, R. Elfakess, M. Sharon, G. Mengus, I. Davidson, and R. Dikstein TAF4/4b{middle dot}TAF12 Displays a Unique Mode of DNA Binding and Is Required for Core Promoter Function of a Subset of Genes J. Biol. Chem., September 25, 2009; 284(39): 26286 - 26296. [Abstract] [Full Text] [PDF] |
||||
![]() |
J. Zeng, S. Zhu, and H. Yan Towards accurate human promoter recognition: a review of currently used sequence features and classification methods Brief Bioinform, September 1, 2009; 10(5): 498 - 508. [Abstract] [Full Text] [PDF] |
||||
![]() |
G. Yarden, R. Elfakess, K. Gazit, and R. Dikstein Characterization of sINR, a strict version of the Initiator core promoter element Nucleic Acids Res., July 1, 2009; 37(13): 4234 - 4246. [Abstract] [Full Text] [PDF] |
||||
![]() |
T. Sengupta, N. Cohet, F. Morle, and J. J. Bieker Distinct modes of gene regulation by a cell-specific transcriptional activator PNAS, March 17, 2009; 106(11): 4213 - 4218. [Abstract] [Full Text] [PDF] |
||||
![]() |
W. Deng, B. Malecova, T. Oelgeschlager, and S. G. E. Roberts TFIIB Recognition Elements Control the TFIIA-NC2 Axis in Transcriptional Regulation Mol. Cell. Biol., March 15, 2009; 29(6): 1389 - 1400. [Abstract] [Full Text] [PDF] |
||||
![]() |
F. Ozsolak, L. L. Poling, Z. Wang, H. Liu, X. S. Liu, R. G. Roeder, X. Zhang, J. S. Song, and D. E. Fisher Chromatin structure analyses identify miRNA promoters Genes & Dev., November 15, 2008; 22(22): 3172 - 3183. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. C. Frith, E. Valen, A. Krogh, Y. Hayashizaki, P. Carninci, and A. Sandelin A code for transcription initiation in mammalian genomes Genome Res., January 1, 2008; 18(1): 1 - 12. [Abstract] [Full Text] [PDF] |
||||
![]() |
Y. Isogai, S. Keles, M. Prestel, A. Hochheimer, and R. Tjian Transcription of histone gene cluster by differential core-promoter factors Genes & Dev., November 15, 2007; 21(22): 2936 - 2949. [Abstract] [Full Text] [PDF] |
||||
![]() |
B. Malecova, P. Gross, M. Boyer-Guittaut, S. Yavuz, and T. Oelgeschlager The Initiator Core Promoter Element Antagonizes Repression of TATA-directed Transcription by Negative Cofactor NC2 J. Biol. Chem., August 24, 2007; 282(34): 24767 - 24776. [Abstract] [Full Text] [PDF] |
||||
![]() |
S. Vardhanabhuti, J. Wang, and S. Hannenhalli Position and distance specificity are important determinants of cis-regulatory motifs in addition to evolutionary conservation Nucleic Acids Res., May 11, 2007; 35(10): 3203 - 3213. [Abstract] [Full Text] [PDF] |
||||
![]() |
J. J. Stewart, J. A. Fischbeck, X. Chen, and L. A. Stargell Non-optimal TATA Elements Exhibit Diverse Mechanistic Consequences J. Biol. Chem., August 11, 2006; 281(32): 22665 - 22673. [Abstract] [Full Text] [PDF] |
||||
![]() |
D.-H. Lee, N. Gershenzon, M. Gupta, I. P. Ioshikhes, D. Reinberg, and B. A. Lewis Functional Characterization of Core Promoter Elements: the Downstream Core Element Is Recognized by TAF1 Mol. Cell. Biol., November 1, 2005; 25(21): 9674 - 9686. [Abstract] [Full Text] [PDF] |
||||
![]() |
N. I. Gershenzon, G. D. Stormo, and I. P. Ioshikhes Computational technique for improvement of the position-weight matrices for the DNA/protein binding sites Nucleic Acids Res., April 22, 2005; 33(7): 2290 - 2301. [Abstract] [Full Text] [PDF] |
||||






