Skip Navigation



Bioinformatics Advance Access published online on December 10, 2004
Bioinformatics, doi:10.1093/bioinformatics/bti194
This Article
Right arrow Advance Access manuscript (PDF) Freely available
Right arrow All Versions of this Article:
21/8/1699    most recent
bti194v1
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrowRequest Permissions
Google Scholar
Right arrow Articles by Kim, T.-H.
Right arrow Articles by Kim, H.-S.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Kim, T.-H.
Right arrow Articles by Kim, H.-S.
Social Bookmarking
Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

Bioinformatics © Oxford University Press 2004; all rights reserved.
Received October 21, 2004
Revised November 11, 2004
Accepted November 26, 2004

Article

HESAS: HERVs expression and structure analysis system

Tae-Hyung Kim 1, Yeo-Jin Jeon 1, Woo-Yeon Kim 1, and Heui-Soo Kim 2*

1 PBBRC, Interdisciplinary Research Program of Bioinformatics, Pusan National University, Busan 609-735, Korea
2 PBBRC, Interdisciplinary Research Program of Bioinformatics, Pusan National University, Busan 609-735, Korea; Division of Biological Sciences, College of Natural Sciences, Pusan National University, Busan 609-735, Korea

* To whom correspondence should be addressed.
Heui-Soo Kim, E-mail: khs307{at}pusan.ac.kr


  Abstract

HESAS (HERVs Expression and Structure Analysis System) database was developed to understand the HERVs (Human Endogenous RetroViruses) that have an effect on the expression of human functional genes. The database products are generated by the exon-based EST clustering and reconstructing of partial HERV structures that result from various mutations during primate evolution. The expression types were classified according to the existence of splicing, transcriptional start, and polyadenylation signal sites. The database currently contains HERV information on 26981 human genes of exon-intron structure. The HERV elements were inserted into 17317 of these genes and linked to expression with 898 genes.

Availability: http://www.primate.or.kr/HESAS.


Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?


This article has been cited by other articles:


Home page
 Nucleic Acids ResHome page
A. Levy, N. Sela, and G. Ast
TranspoGene and microTranspoGene: transposed elements influence on the transcriptome of seven vertebrates and invertebrates
Nucleic Acids Res., January 11, 2008; 36(suppl_1): D47 - D52.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
G. O. Sperber, T. Airola, P. Jern, and J. Blomberg
Automated recognition of retroviral sequences in genomic data RetroTector(C)
Nucleic Acids Res., August 1, 2007; 35(15): 4964 - 4976.
[Abstract] [Full Text] [PDF]


Disclaimer:
Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.