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Bioinformatics Advance Access published online on December 7, 2004
Bioinformatics, doi:10.1093/bioinformatics/bti195
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Bioinformatics © Oxford University Press 2004; all rights reserved.
Received October 1, 2004
Revised November 22, 2004
Accepted November 26, 2004

Applications note

RBT--a tool for building refined Buneman trees

Søren Besenbacher 1*, Thomas Mailund 1, Lasse Westh-Nielsen 1, and Christian N. S. Pedersen 1

1 Bioinformatics Research Center and Department of Computer Science, University of Aarhus, Høegh-Guldbergs Gade 10, Building 090, DK-8000 Århus C, Denmark

* To whom correspondence should be addressed.
Søren Besenbacher, E-mail: besen{at}daimi.au.dk


  Abstract

Summary: We have developed a tool implementing an efficient algorithm for refined Buneman tree reconstruction. The algorithm--which has the same complexity as the neighbour-joining method and the (plain) Buneman tree construction--enables refined Buneman tree reconstruction on large taxa sets.

Availability: The source code for RBT, written in Java, is available under the GNU Public License (GPL) at http://www.birc.dk/Software/RBT.


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