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Bioinformatics Advance Access published online on December 21, 2004
Bioinformatics, doi:10.1093/bioinformatics/bti237
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Bioinformatics © Oxford University Press 2004; all rights reserved.
Received September 16, 2004
Revised November 8, 2004
Accepted December 15, 2004

Applications note

An enhanced Java graph applet interface for visualizing interactomes

Aaron N. Chang 1, Jason McDermott 2, and Ram Samudrala 2*

1 Biomedical and Health Informatics, University of Washington, Seattle, Washington 98195, USA; Dept. of Microbiology, University of Washington, Seattle, Washington 98195, USA
2 Dept. of Microbiology, University of Washington, Seattle, Washington 98195, USA

* To whom correspondence should be addressed.
Ram Samudrala, E-mail: ram{at}compbio.washington.edu


  Abstract

Summary: We have developed several new navigation features for a Java graph applet previously released for visualizing protein-protein interactions. This graph viewer can be used to navigate any molecular interactome data set. We have successfully implemented this tool for exploring protein networks stored in the Bioverse interaction database.

Availability: http://bioverse.compbio.washington.edu/viewer.


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