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Bioinformatics Advance Access published online on January 18, 2005
Bioinformatics, doi:10.1093/bioinformatics/bti271
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Bioinformatics © Oxford University Press 2005; all rights reserved.
Received June 25, 2004
Revised December 15, 2004
Accepted January 10, 2005

Applications note

IntegratedMap: a Web interface for integrating genetic map data

Hongyu Yang 1, Hongyu Wang 1, and Alan R. Gingle 1*

1 Center for Applied Genetic Technologies, University of Georgia, 111 Riverbend Rd., Athens, GA 30602, USA

* To whom correspondence should be addressed.
Alan R. Gingle, E-mail: agingle{at}uga.edu


  Abstract

Summary: IntegratedMap is a Web application and database schema for storing and interactively displaying genetic map data. Its Web interface includes a menu for direct chromosome/linkage group selection, a search form for selection based on mapped object location and linkage group displays. An overview display provides convenient access to the full range of mapped and anchored object types with genetic locus details like numbers, types and names of mapped/anchored objects displayed in a compact scrollable list box that automatically updates based on selected map location and object type. Also, multi-linkage group and localized map views are available along with links that can be configured for integration with other Web resources.

Availability: IntegratedMap is implemented in C#/ASP.NET and the package, including a MySQL schema creation script, is available from http://cggc.agtec.uga.edu/Data/download.asp.


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