Skip Navigation



Bioinformatics Advance Access published online on February 18, 2005
Bioinformatics, doi:10.1093/bioinformatics/bti321
This Article
Right arrow Advance Access manuscript (PDF) Freely available
Right arrow All Versions of this Article:
21/10/2563    most recent
bti321v1
Right arrow Comments: Submit a response
Right arrow Alert me when this article is cited
Right arrow Alert me when Comments are posted
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrowRequest Permissions
Google Scholar
Right arrow Articles by Jacques, P.-E.
Right arrow Articles by Brzezinski, R.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Jacques, P.-E.
Right arrow Articles by Brzezinski, R.
Social Bookmarking
Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

© The Author (2005). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oupjournals.org
Received December 27, 2004
Revised February 4, 2005
Accepted February 9, 2005

Applications note

MtbRegList, a database dedicated to the analysis of transcriptional regulation in Mycobacterium tuberculosis

Pierre-Étienne Jacques 1, Alain L. Gervais 2, Mathieu Cantin 3, Jean-François Lucier 4, Guillaume Dallaire 3, Geneviève Drouin 5, Luc Gaudreau 5, Jean Goulet 3, and Ryszard Brzezinski 5*

1 Département de Biologie, Université de Sherbrooke, Sherbrooke (J1K 2R1), Canada; Département d'Informatique, Université de Sherbrooke, Sherbrooke (J1K 2R1), Canada
2 Département d'Informatique, Université de Sherbrooke, Sherbrooke (J1K 2R1), Canada; Département de Biologie, Université de Sherbrooke, Sherbrooke (J1K 2R1), Canada
3 Département d'Informatique, Université de Sherbrooke, Sherbrooke (J1K 2R1), Canada
4 Département de Microbiologie et Infectiologie, Université de Sherbrooke, Sherbrooke (J1K 2R1), Canada
5 Département de Biologie, Université de Sherbrooke, Sherbrooke (J1K 2R1), Canada

* To whom correspondence should be addressed.
Ryszard Brzezinski, E-mail: Ryszard.Brzezinski{at}USherbrooke.ca


  Abstract

Summary: MtbRegList is a database dedicated to the analysis of gene expression and regulation data in Mycobacterium tuberculosis. It is designed to contain predicted and characterized regulatory DNA motifs cross-referenced with corresponding transcription factor(s), and experimentally identified transcription start sites. MtbRegList can also handle flexible and complex genomic search requests, along with noteworthy browsing capability.

Availability: MtbRegList is publicly available at http://www.USherbrooke.ca/vers/MtbRegList.

Supplementary Information: On the MtbRegList Web site.


Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?


This article has been cited by other articles:


Home page
 Nucleic Acids ResHome page
P. S. Novichkov, O. N. Laikova, E. S. Novichkova, M. S. Gelfand, A. P. Arkin, I. Dubchak, and D. A. Rodionov
RegPrecise: a database of curated genomic inferences of transcriptional regulatory interactions in prokaryotes
Nucleic Acids Res., November 1, 2009; (2009) gkp894v1.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
J. Krawczyk, T. A. Kohl, A. Goesmann, J. Kalinowski, and J. Baumbach
From Corynebacterium glutamicum to Mycobacterium tuberculosis--towards transfers of gene regulatory networks and integrated data analyses with MycoRegNet
Nucleic Acids Res., August 1, 2009; 37(14): e97 - e97.
[Abstract] [Full Text] [PDF]

Home page
 MicrobiologyHome page
M. d. l. P. Santangelo, L. Klepp, J. Nunez-Garcia, F. C. Blanco, M. Soria, M. d. C. Garcia-Pelayo, M. V. Bianco, A. A. Cataldi, P. Golby, M. Jackson, et al.
Mce3R, a TetR-type transcriptional repressor, controls the expression of a regulon involved in lipid metabolism in Mycobacterium tuberculosis
Microbiology, July 1, 2009; 155(7): 2245 - 2255.
[Abstract] [Full Text] [PDF]

Home page
 Brief BioinformHome page
J. Baumbach, A. Tauch, and S. Rahmann
Towards the integrated analysis, visualization and reconstruction of microbial gene regulatory networks
Brief Bioinform, January 1, 2009; 10(1): 75 - 83.
[Abstract] [Full Text] [PDF]

Home page
 MicrobiologyHome page
X. Pang, P. Vu, T. F. Byrd, S. Ghanny, P. Soteropoulos, G. V. Mukamolova, S. Wu, B. Samten, and S. T. Howard
Evidence for complex interactions of stress-associated regulons in an mprAB deletion mutant of Mycobacterium tuberculosis
Microbiology, April 1, 2007; 153(4): 1229 - 1242.
[Abstract] [Full Text] [PDF]


Disclaimer: Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.