Skip Navigation



Bioinformatics Advance Access published online on March 3, 2005
Bioinformatics, doi:10.1093/bioinformatics/bti354
This Article
Right arrow Advance Access manuscript (PDF) Freely available
Right arrow All Versions of this Article:
21/10/2528    most recent
bti354v1
Right arrow Comments: Submit a response
Right arrow Alert me when this article is cited
Right arrow Alert me when Comments are posted
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrowRequest Permissions
Google Scholar
Right arrow Articles by Unneberg, P.
Right arrow Articles by Sterky, F.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Unneberg, P.
Right arrow Articles by Sterky, F.
Social Bookmarking
Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

© The Author (2005). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oupjournals.org
Received December 9, 2004
Revised January 13, 2005
Accepted February 23, 2005

Applications note

SNP discovery using advanced algorithms and neural networks

Per Unneberg 1, Michael Strömberg 1, and Fredrik Sterky 1*

1 Royal Institute of Technology, AlbaNova University Center, Department of Biotechnology, S-106 91 Stockholm, Sweden

* To whom correspondence should be addressed.
Fredrik Sterky, E-mail: fredrik{at}biotech.kth.se


  Abstract

Summary: Forage is an application which uses two neural networks for detecting single nucleotide polymorphisms (SNPs). Potential SNP candidates are identified in multiple alignments. Each candidate is then represented by a vector of features, which is classified as SNP or monomorphic by the networks. A validated data set of SNPs was constructed from experimentally verified SNP data and used for network training and method evalutation.

Availability: The package is available at biobase.biotech.kth.se/forage/.

Supplementary information: Additional results and method description can be found at biobase.biotech.kth.se/forage/.


Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?


This article has been cited by other articles:


Home page
 BioinformaticsHome page
J. L. Wegrzyn, J. M. Lee, J. Liechty, and D. B. Neale
PineSAP--sequence alignment and SNP identification pipeline
Bioinformatics, October 1, 2009; 25(19): 2609 - 2610.
[Abstract] [Full Text] [PDF]

Home page
 J Gerontol A Biol Sci Med SciHome page
M. D. Fallin and A. Matteini
Genetic Epidemiology in Aging Research
J Gerontol A Biol Sci Med Sci, January 23, 2009; (2009) gln021v1.
[Abstract] [Full Text] [PDF]


Disclaimer: Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.