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Bioinformatics Advance Access published online on March 3, 2005
Bioinformatics, doi:10.1093/bioinformatics/bti356
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© The Author (2005). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oupjournals.org
Received November 17, 2004
Revised February 20, 2005
Accepted February 24, 2005

Applications note

WebAllergen: a web server for predicting allergenic proteins

Tariq Riaz 1, Hen Ley Hor 1, Arun Krishnan 1, Francis Tang 1, and Kuo-Bin Li 1*

1 Bioinformatics Institute, 30 Biopolis Street, Singapore 138671, Republic of Singapore

* To whom correspondence should be addressed.
Kuo-Bin Li, E-mail: kuobin{at}bii.a-star.edu.sg


  Abstract

Summary: WebAllergen is a web server that predicts the potential allergenicity of proteins. The query protein will be compared against a set of pre-built allergenic motifs that have been obtained from 664 known allergen proteins. The query will also be compared with known allergens that don't have detectable allergenic motifs. Moreover, users are allowed to upload their own allergens as alternative training sequences on which a new set of allergenic motifs will be built. The query sequences can also be compared against those motifs.

Availability: http://weballergen.bii.a-star.edu.sg/.


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