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Bioinformatics Advance Access published online on March 3, 2005
Bioinformatics, doi:10.1093/bioinformatics/bti357
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© The Author (2005). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oupjournals.org
Received October 15, 2004
Revised February 7, 2005
Accepted February 24, 2005

Applications note

ArrayCyGHt: a web application for analysis and visualization of arrayCGH data

Su Young Kim 1, Suk Woo Nam 1, Sug Hyung Lee 1, Won Sang Park 1, Nam Jin Yoo 1, Jung Young Lee 1, and Yeun-Jun Chung 2*

1 Microdissection Genomics Research Center, College of Medicine, The Catholic University of Korea, Seoul, 137-701, Republic of Korea; Department of Pathology, College of Medicine, The Catholic University of Korea, Seoul, 137-701, Republic of Korea
2 Department of Microbiology, College of Medicine, The Catholic University of Korea, Seoul, 137-701, Republic of Korea

* To whom correspondence should be addressed.
Yeun-Jun Chung, E-mail: yejun{at}catholic.ac.kr


  Abstract

Summary: ArrayCyGHt is a web-based application tool for analysis and visualization of microarray-comparative genomic hybridization (array-CGH) data. Full process of array-CGH data analysis, from normalization of raw data to the final visualization of copy number gain or loss, can be straightforwardly achieved on this arrayCyGHt system without any further software. ArrayCyGHt, therefore, provides an easy and fast tool for the analysis of copy number aberrations in any kinds of data format.

Availability: ArrayCyGHt can be accessed at http://genomics.catholic.ac.kr/arrayCGH/.

Supplementary information: Technical documentation is available. See http://genomics.catholic.ac.kr/arrayCGH/.


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