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Bioinformatics Advance Access published online on May 6, 2005
Bioinformatics, doi:10.1093/bioinformatics/bti485
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© The Author (2005). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oupjournals.org
Received November 19, 2004
Revised April 29, 2005
Accepted May 3, 2005

Applications note

GMCheck: Bayesian error checking for pedigree genotypes and phenotypes

Alun Thomas 1*

1 Department of Medical Informatics, University of Utah, 391 Chipeta Way Suite D, Salt Lake City, UT 84108, USA

* To whom correspondence should be addressed.
Alun Thomas, E-mail: alun{at}genepi.med.utah.edu


  Abstract

Summary: GMCheck uses graphical modeling to find the posterior probabilities of data errors given genotypes or phenotypes in a specified pedigree structure.

Availability: The Java classes and Javadocs pages for GMCheck can be obtained from bioinformatics.med.utah.edu/~alun, which also has information on use, parameter settings and file formats.


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