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Bioinformatics Advance Access published online on May 6, 2005
Bioinformatics, doi:10.1093/bioinformatics/bti489
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© The Author (2005). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oupjournals.org
Received March 22, 2005
Revised May 3, 2005
Accepted May 4, 2005

Applications note

CGHMultiArray: exact p-values for multi-array CGH-data

Mark A. van de Wiel 1*, Serge J. Smeets 2, Ruud H. Brakenhoff 2, and Bauke Ylstra 3

1 Department of Mathematics and Computer Science, Technische Universiteit Eindhoven, PO Box 513, 5600 MB, Eindhoven, The Netherlands; Microarray Core Facility, VU University Medical Center, Amsterdam, The Netherlands
2 Department of Otolaryngology - Head and Neck Surgery, VU University Medical Center, Amsterdam, The Netherlands
3 Microarray Core Facility, VU University Medical Center, Amsterdam, The Netherlands

* To whom correspondence should be addressed.
Mark A. van de Wiel, E-mail: m.a.v.d.wiel{at}tue.nl


  Abstract

Summary: We compute p-values, based on the Wilcoxon test with ties, to compare two conditions with array CGH-data, and provide a simple interface to export and plot these p-values.

Availability: CGHMultiArray is freely available at http://www.win.tue.nl/~markvdw/CGHMultiArray.html.

Supplementary information: Programs, the manual and supplementary information are available on the web site.


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