Skip Navigation



Bioinformatics Advance Access published online on May 19, 2005
Bioinformatics, doi:10.1093/bioinformatics/bti506
This Article
Right arrow Advance Access manuscript (PDF) Freely available
Right arrow All Versions of this Article:
21/14/3198    most recent
bti506v1
Right arrow Comments: Submit a response
Right arrow Alert me when this article is cited
Right arrow Alert me when Comments are posted
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrowRequest Permissions
Google Scholar
Right arrow Articles by Jones, P.
Right arrow Articles by Apweiler, R.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Jones, P.
Right arrow Articles by Apweiler, R.
Social Bookmarking
Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

© The Author (2005). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oupjournals.org
Received April 4, 2005
Accepted May 17, 2005

Applications note

Dasty and UniProt DAS: a perfect pair for protein feature visualization

Philip Jones 1*, Nisha Vinod 1, Thomas Down 2, Andre Hackmann 1, Andreas Kahari 1, Ernst Kretschmann 1, Antony Quinn 1, Daniela Wieser 1, Henning Hermjakob 1, and Rolf Apweiler 1

1 EMBL Outstation - European Bioinformatics Institute (EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK
2 Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SA, UK

* To whom correspondence should be addressed.
Philip Jones, E-mail: pjones{at}ebi.ac.uk


  Abstract

Summary: Here we present two freely available and complementary DAS resources: a DAS reference server that provides up-to-date sequence and annotation from UniProt, with additional feature links and database cross-references from InterPro and a DAS client implemented using Java and Macromedia Flash that is optimized for the display of protein features.

Availability: The Dasty DAS client is freely available at the URL indicated in table 1. It is intended that the Dasty client package and source code will become available for download and local installation in the coming weeks. The UniProt DAS reference server and associated documentation can be freely accessed via the EBI site at the link in table 1.

Contact: For further details of the Dasty client, please contact Nisha Vinod (nvinod@ebi.ac.uk).


Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?


This article has been cited by other articles:


Home page
 BioinformaticsHome page
N. Jimenez-Lozano, J. Segura, J. R. Macias, J. Vega, and J. M. Carazo
aGEM: an integrative system for analyzing spatial-temporal gene-expression information
Bioinformatics, October 1, 2009; 25(19): 2566 - 2572.
[Abstract] [Full Text] [PDF]

Home page
 BioinformaticsHome page
H. Blankenburg, R. D. Finn, A. Prlic, A. M. Jenkinson, F. Ramirez, D. Emig, S.-E. Schelhorn, J. Buch, T. Lengauer, and M. Albrecht
DASMI: exchanging, annotating and assessing molecular interaction data
Bioinformatics, May 15, 2009; 25(10): 1321 - 1328.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
K. Kandasamy, S. Keerthikumar, R. Goel, S. Mathivanan, N. Patankar, B. Shafreen, S. Renuse, H. Pawar, Y. L. Ramachandra, P. K. Acharya, et al.
Human Proteinpedia: a unified discovery resource for proteomics research
Nucleic Acids Res., January 1, 2009; 37(suppl_1): D773 - D781.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
I. M. Overton, C. A. J. van Niekerk, L. G. Carter, A. Dawson, D. M. A. Martin, S. Cameron, S. A. McMahon, M. F. White, W. N. Hunter, J. H. Naismith, et al.
TarO: a target optimisation system for structural biology
Nucleic Acids Res., July 1, 2008; 36(suppl_2): W190 - W196.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
J. A. Siepen, K. Belhajjame, J. N. Selley, S. M. Embury, N. W. Paton, C. A. Goble, S. G. Oliver, R. Stevens, L. Zamboulis, N. Martin, et al.
ISPIDER Central: an integrated database web-server for proteomics
Nucleic Acids Res., July 1, 2008; 36(suppl_2): W485 - W490.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
M. Amico, M. Finelli, I. Rossi, A. Zauli, A. Elofsson, H. Viklund, G. von Heijne, D. Jones, A. Krogh, P. Fariselli, et al.
PONGO: a web server for multiple predictions of all-alpha transmembrane proteins.
Nucleic Acids Res., July 1, 2006; 34(Web Server issue): W169 - W172.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
E. Birney, D. Andrews, M. Caccamo, Y. Chen, L. Clarke, G. Coates, T. Cox, F. Cunningham, V. Curwen, T. Cutts, et al.
Ensembl 2006
Nucleic Acids Res., January 1, 2006; 34(suppl_1): D556 - D561.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
P. Jones, R. G. Cote, L. Martens, A. F. Quinn, C. F. Taylor, W. Derache, H. Hermjakob, and R. Apweiler
PRIDE: a public repository of protein and peptide identifications for the proteomics community
Nucleic Acids Res., January 1, 2006; 34(suppl_1): D659 - D663.
[Abstract] [Full Text] [PDF]


Disclaimer: Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.