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Bioinformatics Advance Access published online on June 7, 2005
Bioinformatics, doi:10.1093/bioinformatics/bti528
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© The Author (2005). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oupjournals.org
Received April 5, 2005
Revised June 3, 2005
Accepted June 5, 2005

Applications note

MineBlast: a literature presentation service supporting protein annotation by data mining of BLAST results

Guido Dieterich 1*, Uwe Kärst 1, Jürgen Wehland 1, and Lothar Jänsch 1

1 Division of Cell Biology, German Research Centre for Biotechnology (GBF), Mascheroder Weg 1, D 38124, Braunschweig, Germany

* To whom correspondence should be addressed.
Guido Dieterich, E-mail: gdi{at}gbf.de


  Abstract

Summary: MineBlast is a web service for literature search and presentation based on data-mining results received from UniProt. Users can submit a simple list of protein sequences via a web-based interface. MineBlast performs a BLASTP search in UniProt to identify names and synonyms based on homologous proteins and subsequently queries PubMed using combined search terms in order to find and present relevant literature.

Availability: http://leger.gbf.de/cgi-bin/MineBlast.pl.


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