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Bioinformatics Advance Access published online on June 30, 2005
Bioinformatics, doi:10.1093/bioinformatics/bti561
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© The Author (2005). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oupjournals.org
Received April 5, 2005
Revised June 20, 2005
Accepted June 27, 2005

Applications note

P-cats: prediction of catalytic residues in proteins from the tertiary structures

Kengo Kinoshita 1* and Motonori Ota 2

1 Institute of Medical Science, University of Tokyo, Shirokanedai, Minato-ku, Tokyo 108-8639, Japan; SORST, JST, Honcho, Kawaguchi, Saitama 332-0012, Japan
2 Global Scientific Information and Computing Center, Tokyo Institute of Technology, O-okayama, Meguro-ku, Tokyo 152-8550, Japan

* To whom correspondence should be addressed.
Kengo Kinoshita, E-mail: kino{at}ims.u-tokyo.ac.jp


  Abstract

Summary: P-cats is a web server that predicts the catalytic residues in proteins from the atomic coordinates. P-cats receives a coordinate file of the tertiary structure and sends out analytical results via e-mail. The reply contains a summary and two URLs to allow the user to examine the conserved residues: one for interactive images of the prediction results and the other for a graphical view of the multiple sequence alignment.

Availability: P-cats is freely available at http://p-cats.hgc.jp/p-cats.


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[Abstract] [Full Text] [PDF]


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