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Bioinformatics Advance Access published online on July 12, 2005
Bioinformatics, doi:10.1093/bioinformatics/bti578
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© The Author (2005). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oupjournals.org
Received July 21, 2004
Revised July 4, 2005
Accepted July 6, 2005

Applications note

Applying GIFT, a gene interactions finder in text, to fly literature

Núria Domedel-Puig 1* and Lorenz Wernisch 1

1 School of Crystallography, Birkbeck College, University of London, Malet Street, London, WC1E 7HX, United Kingdom

* To whom correspondence should be addressed.
Núria Domedel-Puig, E-mail: n.domedel_puig{at}cryst.bbk.ac.uk


  Abstract

Summary: A number of freely available text mining tools have been put together to extract highly reliable Drosophila gene interaction data from text. The system has been tested with The Interactive Fly, showing low recall (27 to 34%), but very high precision (93-97%).

Availability: The extracted data and a web interface for submission of texts to GIFT analysis are available at http://gift.cryst.bbk.ac.uk/gift.

Supplementary information: Additional documentation, such as the dictionaries and the reference sets, are available at the GIFT website.


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