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Bioinformatics Advance Access published online on July 19, 2005
Bioinformatics, doi:10.1093/bioinformatics/bti587
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© The Author (2005). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oupjournals.org
Received March 23, 2005
Revised May 16, 2005
Accepted July 14, 2005

Applications note

GeneCruiser: a web service for the annotation of microarray data

Ted Liefeld 1*, Michael Reich 1, Josh Gould 1, Peili Zhang 1, Pablo Tamayo 1, and Jill P. Mesirov 1

1 Broad Institute of MIT and Harvard, Cambridge, Massachusetts, 02141, USA

* To whom correspondence should be addressed.
Ted Liefeld, E-mail: genecruiser{at}broad.mit.edu


  Abstract

Summary: GeneCruiser is a web service allowing users to annotate their genomic data by mapping microarray feature identifiers to gene identifiers from databases such as UniGene, while providing links to web resources such as the UCSC Genome Browser. It relies on a regularly updated database that retrieves and indexes the mappings between microarray probes and genomic databases. Genes are identified using the Life Sciences Identifier standard.

Availability: GeneCruiser is freely available in the following forms: Web service and Web application: http://www.genecruiser.org.

GenePattern: GeneCruiser access has been integrated into our microarray analysis platform, GenePattern. http://www.genepattern.org.


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