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Bioinformatics Advance Access published online on July 19, 2005
Bioinformatics, doi:10.1093/bioinformatics/bti589
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© The Author (2005). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oupjournals.org
Received March 25, 2005
Revised June 25, 2005
Accepted July 14, 2005

Applications note

PACdb: PolyA Cleavage Site and 3'-UTR Database

J. Michael Brockman 1 {dagger}, Priyam Singh 1 {dagger}, Donglin Liu 2, Sean Quinlan 3, Jesse Salisbury 4, and Joel H. Graber 5*

1 The Jackson Laboratory, Bar Harbor, ME 04609, USA; Bioinformatics Program, Boston University, Boston, MA 02215, USA
2 The Jackson Laboratory, Bar Harbor, ME 04609, USA
3 Bioinformatics Program, Boston University, Boston, MA 02215, USA
4 The Jackson Laboratory, Bar Harbor, ME 04609, USA; Functional Genomics Program, University of Maine, Orono, ME 04469, USA
5 The Jackson Laboratory, Bar Harbor, ME 04609, USA; Bioinformatics Program, Boston University, Boston, MA 02215, USA; Functional Genomics Program, University of Maine, Orono, ME 04469, USA

* To whom correspondence should be addressed.
Joel H. Graber, E-mail: joel.graber{at}jax.org


  Abstract

Summary: The PolyA Cleavage Site and 3'-UTR Database (PACdb) is a web-accessible database that catalogs putative 3'-processing sites and 3'-UTR sequences for multiple organisms. Sites have been identified primarily via EST-genome alignments, enabling delineation of both the specificities and heterogeneity of 3'-processing events.

Availability: By web browser or CGI: PACdb: http://harlequin.jax.org/pacdb/ AtPACdb: http://harlequin.jax.org/atpacdb/.

Supplementary information: Available online at http://harlequin.jax.org/pacdb/supplemental.php.

{dagger}These authors contributed equally to this work.
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