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Bioinformatics Advance Access published online on July 19, 2005
Bioinformatics, doi:10.1093/bioinformatics/bti590
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© The Author (2005). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oupjournals.org
Received June 7, 2005
Revised July 7, 2005
Accepted July 15, 2005

Applications note

Phylogenetic trees: visualizing, customizing and detecting incongruence

Geert Trooskens 1, David De Beule 2, Frederik Decouttere 2, and Wim Van Criekinge 1*

1 Laboratorium for bioinformatics and computational genomics (BioBix), Department of Molecular Biotechnology, Faculty of Bioscience Engineering, Ghent University, Ghent, Belgium
2 Genohm, Waarloos, Belgium

* To whom correspondence should be addressed.
Wim Van Criekinge, E-mail: wim.vancriekinge{at}ugent.be


  Abstract

Summary: TreeIllustrator is a user-friendly application to visualize and customize phylogenetic trees. It has a broad range of functions and capabilities, such as dragging of nodes, different tree shapes, zooming and searching capabilities, and support for large trees. It acts as a solution that integrates the specificity of visualizing phylogenetic trees and the customization options of a drawing program. It also contains a simple and effective method that compares a custom tree with the Tree of Life, by detecting incongruence.

Availability: A free version is available online at http://nexus.ugent.be/geert/.


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