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Bioinformatics Advance Access published online on July 26, 2005
Bioinformatics, doi:10.1093/bioinformatics/bti594
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© The Author (2005). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oupjournals.org
Received July 5, 2005
Revised July 20, 2005
Accepted July 21, 2005

Applications note

pIQPNNI - parallel reconstruction of large maximum likelihood phylogenies

Bui Quang Minh 1, Le Sy Vinh 2, Arndt von Haeseler 3*, and Heiko A. Schmidt 2

1 Albert-Ludwigs-University, Freiburg, Germany
2 NIC, FZ Jülich, Germany
3 Heinrich-Heine-University, Düsseldorf, Germany

* To whom correspondence should be addressed.
Arndt von Haeseler, E-mail: haeseler{at}cs.uni-duesseldorf.de


  Abstract

Summary: IQPNNI is a program to infer maximum-likelihood phylogenetic trees from DNA or protein data with large number of sequences. We present an improved and MPI-parallel implementation showing very good scaling and speedup behavior.

Availability: IQPNNI (http://www.bi.uni-duesseldorf.de/software/iqpnni) is written in C++, executable on UNIX/Linux, Windows and MacOS systems. (Free) MPI libraries can be found at http://www.lam-mpi.org/mpi/implementations/.


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