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Bioinformatics Advance Access published online on September 27, 2005
Bioinformatics, doi:10.1093/bioinformatics/bti696
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© The Author (2005). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org
Received June 28, 2005
Revised September 13, 2005
Accepted September 26, 2005

Applications note

Medusa: a simple tool for interaction graph analysis

Sean D. Hooper 1* and Peer Bork 2

1 European Molecular Biology Laboratory, Heidelberg, Germany
2 European Molecular Biology Laboratory, Heidelberg, Germany; Max Delbrück Center for Molecular Medicine, Berlin-Buch

* To whom correspondence should be addressed.
Sean D. Hooper, E-mail: hooper{at}embl.de


  Abstract

Summary: Medusa is a java application for visualizing and manipulating graphs of interaction, such as data from the STRING database. It features an intuitive user interface developed with the help of biologists. Medusa is optimized for accessing protein interaction data from STRING, but can be used for any type of graph from any scientific field.

Availability: Medusa, along with sample data sets and instructions, can be downloaded from http://www.bork.embl.de/medusa.


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