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Bioinformatics Advance Access published online on October 4, 2005
Bioinformatics, doi:10.1093/bioinformatics/bti698
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© The Author (2005). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org
Received August 5, 2005
Accepted September 27, 2005

Applications note

OxfordGrid: a web interface for pair wise comparative map views

Hongyu Yang 1 and Alan R. Gingle 1*

1 Center for Applied Genetic Technologies, University of Georgia, 111 Riverbend Rd., Athens, GA 30602, USA

* To whom correspondence should be addressed.
Alan R. Gingle, E-mail: agingle{at}uga.edu


  Abstract

Summary: OxfordGrid is a Web application and database schema for storing and interactively displaying genetic map data in a comparative, dot-plot, fashion. Its display is composed of a matrix of cells, each representing a pair wise comparison of mapped probe data for two linkage groups or chromosomes. These are arranged along the axes with one forming grid columns and the other grid rows with the degree and pattern of synteny/colinearity between the two linkage groups manifested in the cell's dot density and structure. A mouse click over the selected grid cell launches an image map based display for the selected cell. Both individual and linear groups of mapped probes can be selected and displayed. Also, configurable links can be used to access other Web resources for mapped probe information.

Availability: OxfordGrid is implemented in C#/ASP.NET and the package, including MySQL schema creation scripts, is available at ftp://cggc.agtec.uga.edu/OxfordGrid/.


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