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Bioinformatics Advance Access published online on December 6, 2005
Bioinformatics, doi:10.1093/bioinformatics/bti807
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© The Author (2005). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org
Received October 9, 2005
Revised November 27, 2005
Accepted November 28, 2005

Applications note

DNAVis: interactive visualization of comparative genome annotations

Mark W. E. J. Fiers 1, Huub van de Wetering 2, Tim H. J. M. Peeters 2, Jarke J. van Wijk 2, and Jan-Peter Nap 3 *

1 Applied Bioinformatics, Plant Research International, Wageningen University and Research Centre, Wageningen, The Netherlands
2 Department of Mathematics and Computer Science, Technische Universiteit Eindhoven, Eindhoven, The Netherlands
3 Applied Bioinformatics, Plant Research International, Wageningen University and Research Centre, Wageningen, The Netherlands; Centre for BioSystems Genomics, Wageningen, The Netherlands

* To whom correspondence should be addressed.
Jan-Peter Nap, E-mail: janpeter.nap{at}wur.nl


  Abstract

Summary: The software package DNAVis offers a fast, interactive and real-time visualization of DNA sequences and their comparative genome annotations. DNAVis implements advanced methods of information visualization such as linked views, perspective walls and semantic zooming, in addition to the display of heterologous data in dot plot-like matrix views.

Availability: software is freely available at www.win.tue.nl/dnavis; the source code is available upon request.

Supplementary information: Figures are at the publisher's site, other information and examples are at www.win.tue.nl/dnavis.


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