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Bioinformatics Advance Access published online on December 15, 2005
Bioinformatics, doi:10.1093/bioinformatics/btk005
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© The Author (2005). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org
Received October 18, 2005
Revised December 10, 2005
Accepted December 11, 2005

Applications note

EDGE: Extraction and Analysis of Differential Gene Expression

Jeffrey T. Leek 1 *, Eva Monsen 1, Alan R. Dabney 1, and John D. Storey 1

1 Department of Biostatistics, University of Washington, Seattle 98195, USA

* To whom correspondence should be addressed.
Jeffrey T. Leek, E-mail: jtleek{at}u.washington.edu


  Abstract

Summary: EDGE (Extraction of Differential Gene Expression) is an open source, point-and-click software program for the significance analysis of DNA microarray experiments. EDGE can perform both standard and time course differential expression analysis. The functions are based on newly developed statistical theory and methods. This document introduces the EDGE software package.

Availability: EDGE is freely available for non-commercial users. EDGE can be downloaded for Windows, Macintosh, and Linux/UNIX from: http://faculty.washington.edu/jstorey/edge.


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