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Bioinformatics Advance Access published online on December 23, 2005
Bioinformatics, doi:10.1093/bioinformatics/btk022
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© The Author (2005). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org
Received November 15, 2005
Revised December 21, 2005
Accepted December 21, 2005

Applications note

ChroCoLoc: an application for calculating the probability of co-localization of microarray gene expression

Jonathon Blake 1 *, Christian Schwager 2, Misha Kapushesky 3, and Alvis Brazma 3

1 EMBL Meyerhofstr.1 D-69117 Heidelberg, Germany; EMBL-European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK
2 EMBL Meyerhofstr.1 D-69117 Heidelberg, Germany
3 EMBL-European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK

* To whom correspondence should be addressed.
Jonathon Blake, E-mail: blake{at}ebi.ac.uk


  Abstract

With the production of whole genome microarray chips the ability arises to investigate whether the regulation of particular groups of genes may be influenced by their chromosomal localization. Chromosome Co-Localization probability calculator (ChroCoLoc) is a publicly available web-based tool for the analysis of co-localization of co-expressed genes identified by microarray experiments.

Availability: http://www.ebi.ac.uk/expressionprofiler/.


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