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Bioinformatics Advance Access published online on January 12, 2006
Bioinformatics, doi:10.1093/bioinformatics/btk042
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© The Author (2006). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org
Received September 22, 2005
Revised December 7, 2005
Accepted January 4, 2006

Applications note

Tools for the SBML community

Colin S. Gillespie 1 *, Darren J. Wilkinson 1, Carole J. Proctor 2, Daryl P. Shanley 2, Richard J. Boys 1, and Thomas B. L. Kirkwood 2

1 School of Mathematics & Statistics, University of Newcastle, Newcastle upon Tyne, NE1 7RU, UK
2 Henry Wellcome Laboratory for Biogerontology Research, School of Clinical and Medical Sciences-Gerontology, University of Newcastle, Newcastle upon Tyne, NE4 6BE, UK

* To whom correspondence should be addressed.
Colin S. Gillespie, E-mail: c.gillespie{at}ncl.ac.uk


  Abstract

Motivation: SBML is quickly becoming the standard format to exchange biochemical models. The tools presented in this paper are loosely-coupled, and are intended to be incorporated into SBML aware applications. The rationale for this is to reduce the amount of repeated work carried out within the community and to create tools that offer a greater number of features to the end-user.

Availability: All tools described are available from http://www.basis.ncl.ac.uk/software and are licensed under GNU General Public License.

Associate Editor: Thomas Lengauer
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