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Bioinformatics Advance Access published online on February 2, 2006
Bioinformatics, doi:10.1093/bioinformatics/btl036
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© The Author (2006). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org
Received August 26, 2005
Revised November 14, 2005
Accepted January 31, 2006

Applications note

The LCB DataWareHouse

Adam Ameur 1, Vladimir Yankovski 1, Stefan Enroth 1, Ola Spjuth 2, and Jan Komorowski 1 *

1 The Linnaeus Centre for Bioinformatics, Uppsala Univ. and The Swedish Univ. for Agricultural Sciences, Sweden
2 Department of Pharmaceutical Biosciences, Uppsala Univ., Sweden

* To whom correspondence should be addressed.
Jan Komorowski, E-mail: Jan.Komorowski{at}lcb.uu.se


  Abstract

Summary: The Linnaeus Centre for Bioinformatics Data WareHouse (LCB-DWH) is a web based infrastructure for reliable and secure microarray gene expression data management and analysis that provides an on-line service for the scientific community. The LCB-DWH is an effort towards a complete system for storage (using the BASE system), analysis, and publication of microarray data. Important features of the system include: access to established methods within R/Bioconductor for data analysis, built-in connection to the Gene Ontology database, and a scripting facility for automatic recording and re-play of all the steps of the analysis. The service is up and running on a high performance server. At present there are more than 150 registered users.

Availability: The system is free to use subject to user agreement conditions. For more details see, http://www.lcb.uu.se/lcbdw.php.

Associate Editor: Alfonso Valencia
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