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Bioinformatics Advance Access published online on February 24, 2006
Bioinformatics, doi:10.1093/bioinformatics/btl052
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© The Author (2006). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org
Received September 14, 2005
Revised December 15, 2005
Accepted February 8, 2006

Applications note

Mass analysis peptide sequence prediction (MAPSP)

Martin Eisenacher 1 {sect}, Jürgen de Braaf 1 {sect}, and Simone König 1 *

1 Integrated Functional Genomics (IFG), Interdisciplinary Center for Clinical Research (IZKF), Westfalian Wilhelms-University of Muenster, Roentgenstr. 21, D-48149 Muenster, Germany

* To whom correspondence should be addressed.
Simone König, E-mail: koenigs{at}uni-muenster.de


  Abstract

Summary: The software tool MAPSP allows the combinatorial prediction of novel short peptides such as hormones with common sequence features. In addition, it assists in de novo sequencing in general. The tool was designed for use in conjunction with the analytical identification method of mass spectrometry (MS) and it can considerably speed up the analysis of unknowns.

Availability: The web interface is freely available at http://mapsp.ifg.uni-muenster.de/.

Associate Editor: Christos Ouzounis

{sect} ME and JdB share first authorship.


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