Skip Navigation



Bioinformatics Advance Access published online on March 1, 2006
Bioinformatics, doi:10.1093/bioinformatics/btl072
This Article
Right arrow Advance Access manuscript (PDF) Freely available
Right arrow All Versions of this Article:
22/8/1015    most recent
btl072v1
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrowRequest Permissions
Google Scholar
Right arrow Articles by Aragues, R.
Right arrow Articles by Oliva, B.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Aragues, R.
Right arrow Articles by Oliva, B.
Social Bookmarking
Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

© The Author (2006). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org
Received December 16, 2005
Revised February 8, 2006
Accepted February 23, 2006

Applications note

PIANA: protein interactions and network analysis

Ramon Aragues 1, Daniel Jaeggi 1, and Baldo Oliva 1 *

1 Structural Bioinformatics Group (GRIB-IMIM), Departament de Ciències Experimentals i de la Salut, Universitat Pompeu Fabra, Barcelona, Catalonia (Spain)

* To whom correspondence should be addressed.
Baldo Oliva, E-mail: boliva{at}imim.es


  Abstract

Summary: We present a software framework and tool called PIANA that facilitates working with protein interaction networks by 1) integrating data from multiple sources, 2) providing a library that handles graph-related tasks and 3) automating the analysis of protein-protein interaction networks. PIANA can also be used as a stand-alone application to create protein interaction networks and perform tasks such as predicting protein interactions and helping to identify spots in a 2D electrophoresis gel.

Availability: PIANA is under the GNU GPL. Source code, database and detailed documentation may be freely downloaded from http://sbi.imim.es/piana.

Associate Editor: Jonathan Wren
Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?


This article has been cited by other articles:


Home page
 Nucleic Acids ResHome page
D. Aguilar, L. Skrabanek, S. S. Gross, B. Oliva, and F. Campagne
Beyond tissueInfo: functional prediction using tissue expression profile similarity searches
Nucleic Acids Res., June 1, 2008; 36(11): 3728 - 3737.
[Abstract] [Full Text] [PDF]

Home page
 BioinformaticsHome page
L. Salwinski and D. Eisenberg
The MiSink Plugin: Cytoscape as a graphical interface to the Database of Interacting Proteins
Bioinformatics, August 15, 2007; 23(16): 2193 - 2195.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
F. Al-Shahrour, P. Minguez, J. Tarraga, I. Medina, E. Alloza, D. Montaner, and J. Dopazo
FatiGO +: a functional profiling tool for genomic data. Integration of functional annotation, regulatory motifs and interaction data with microarray experiments
Nucleic Acids Res., July 13, 2007; 35(suppl_2): W91 - W96.
[Abstract] [Full Text] [PDF]

Home page
 Brief BioinformHome page
T. Aittokallio and B. Schwikowski
Graph-based methods for analysing networks in cell biology
Brief Bioinform, September 1, 2006; 7(3): 243 - 255.
[Abstract] [Full Text] [PDF]


Disclaimer:
Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.