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Bioinformatics Advance Access published online on April 4, 2006
Bioinformatics, doi:10.1093/bioinformatics/btl093
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© The Author (2006). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org
Received December 20, 2005
Revised March 7, 2006
Accepted March 9, 2006

Applications note

ProMAT: protein microarray analysis tool

Amanda M. White 1 *, Don S. Daly 1, Susan M. Varnum 2, Kevin K. Anderson 3, Nikki Bollinger 2, and Richard C. Zangar 2

1 Statistical Sciences, Pacific Northwest National Laboratory, Richland, WA 99354, USA
2 Cell Biology & Biochemistry, Pacific Northwest National Laboratory, Richland, WA 99354, USA
3 Decision & Sensor Analytics, Pacific Northwest National Laboratory, Richland, WA 99354, USA

* To whom correspondence should be addressed.
Amanda M. White, E-mail: amanda.white{at}pnl.gov


  Abstract

Summary: ProMAT is a software tool for statistically analyzing data from ELISA microarray experiments. The software estimates standard curves, sample protein concentrations and their uncertainties for multiple assays. ProMAT generates a set of comprehensive figures for assessing results and diagnosing process quality. The tool is available for Windows or Mac, and is distributed as open-source Java and R code.

Availability: ProMAT is available at http://www.pnl.gov/statistics/ProMAT. ProMAT requires Java version 1.5.0 and R version 1.9.1 (or more recent versions). ProMAT requires either Windows XP or Mac OS 10.4 or newer versions.

Associate Editor: Martin Bishop
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[Abstract] [Full Text] [PDF]


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