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Bioinformatics Advance Access published online on March 21, 2006
Bioinformatics, doi:10.1093/bioinformatics/btl107
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© The Author (2006). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org
Received March 9, 2006
Accepted March 18, 2006

Applications note

DRTF: a database of rice transcription factors

Ge Gao 1, Yingfu Zhong 1, Anyuan Guo 1, Qihui Zhu 1, Wen Tang 1, Weimou Zheng 2, Xiaocheng Gu 1, Liping Wei 1 *, and Jingchu Luo 1

1 Center for Bioinformatics, National Laboratory of Protein Engineering and Plant Genetic Engineering, College of Life Sciences, Peking University, Beijing 100871, P. R. China
2 The Institute of Theoretical Physics, Chinese Academy of Sciences, Beijing 100080, P.R. China

* To whom correspondence should be addressed.
Liping Wei, E-mail: drtf{at}mail.cbi.pku.edu.cn


  Abstract

Summary: DRTF contains 2,025 putative transcription factors (TFs) in Oryza sativa L. ssp. indica and 2,384 in ssp. japonica, distributed in 63 families, identified by computational prediction and manual curation. It includes detailed annotations of each TF including sequence features, functional domains, Gene Ontology assignment, chromosomal localization, EST and microarray expression information, as well as multiple sequence alignment of the DNA binding domains for each TF family. The database can be browsed and searched with a user-friendly web interface.

Availability: DRTF is available at http://drtf.cbi.pku.edu.cn.

Associate Editor: Martin Bishop
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