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Bioinformatics Advance Access published online on March 30, 2006
Bioinformatics, doi:10.1093/bioinformatics/btl111
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© The Author (2006). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org
Received February 14, 2006
Revised March 20, 2006
Accepted March 21, 2006

Applications note

SBMLToolbox: an SBML toolbox for MATLAB users

Sarah M. Keating 1 *, Benjamin J. Bornstein 2, Andrew Finney 3, and Michael Hucka 4

1 Science and Technology Research Institute, University of Hertfordshire, Hatfield, UK
2 NASA Jet Propulsion Laboratory, Pasadena, California, USA
3 Physiomics PLC, Oxford, UK
4 Biological Network Modeling Centre, Beckman Institute 139-74, California Institute of Technology, Pasadena, California, USA

* To whom correspondence should be addressed.
Sarah M. Keating, E-mail: s.m.keating{at}herts.ac.uk


  Abstract

Summary: We present SBMLToolbox, a toolbox that facilitates importing and exporting models represented in the Systems Biology Markup Language (SBML) into and out of the MATLAB environment and provides functionality that enables an experienced user of either SBML or MATLAB to combine the computing power of MATLAB with the portability and exchangeability of an SBML model. SBMLToolbox supports all levels and versions of SBML.

Availability: SBMLToolbox is freely available from http://sbml.org/software/sbmltoolbox.

Associate Editor: Golan Yona
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