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Bioinformatics Advance Access published online on May 3, 2006
Bioinformatics, doi:10.1093/bioinformatics/btl163
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© The Author (2006). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org
Received February 16, 2006
Revised March 23, 2006
Accepted April 24, 2006

Applications note

Integrative Array Analyzer: a software package for analysis of cross-platform and cross-species microarray data

Fei Pan 1 *, Kiran Kamath 1 *, Kangyu Zhang 1, Sudip Pulapura 1, Avinash Achar 1, Juan Nunez-Iglesias 1, Yu Huang 1, Xifeng Yan 2, Jiawei Han 2, Haiyan Hu 1, Min Xu 1, and Xianghong Jasmine Zhou 1 *

1 Program in Molecular and Computational Biology, University of Southern California, Los Angeles, USA
2 Department of Computer Science, Univ. of Illinois at Urbana-Champaign, Urbana, IL 61801, USA


  Abstract

Summary: The rapid accumulation of microarray data translates into an urgent need for tools to perform integrative microarray analysis. Integrative Array Analyzer is a comprehensive analysis and visualization software toolkit, which aims to facilitate the reuse of the large amount of cross-platform and cross-species microarray data. It is composed of data preprocess module, co-expression analysis module, differential expression analysis module, functional and transcriptional annotation module, and graph visualization module.

Availability: http://zhoulab.usc.edu.

Associate Editor: Joaquin Dopazo

* These two authors contributed equally.


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