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Bioinformatics Advance Access published online on June 29, 2006
Bioinformatics, doi:10.1093/bioinformatics/btl285
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© The Author (2006). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org
Received April 25, 2006
Accepted May 31, 2006

Applications note

ET Viewer: an application for predicting and visualizing functional sites in protein structures

Daniel H. Morgan 1, David M. Kristensen 1, David Mittelman 2, and Olivier Lichtarge 1 *

1 Department of Molecular and Human Genetics, One Baylor Plaza, Houston, TX 77030; Program in Structural and Computational Biology and Molecular Biophysics, One Baylor Plaza, Houston, TX 77030
2 Department of Biochemistry, One Baylor Plaza, Houston, TX 77030; Program in Structural and Computational Biology and Molecular Biophysics, One Baylor Plaza, Houston, TX 77030

* To whom correspondence should be addressed.
Olivier Lichtarge, E-mail: lichtarge{at}bcm.edu


  Abstract

Summary: The Evolutionary Trace Viewer (ETV) provides a one-stop environment in which to run, visualize, and interpret Evolutionary Trace (ET) predictions of functional sites in protein structures. ETV is implemented using Java to run across different operating systems using Java Web Start technology.

Availability: The ETV is available for download from our website at http://mammoth.bcm.tmc.edu/traceview/index.html. This webpage also links to sample trace results and a user manual that describes ET Viewer functions in detail.

Associate Editor: Dmitrij Frishman
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