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Bioinformatics Advance Access published online on July 24, 2006
Bioinformatics, doi:10.1093/bioinformatics/btl367
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© The Author (2006). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org
Received April 18, 2006
Revised June 13, 2006
Accepted July 2, 2006

Applications note

arrayQCplot: software for checking the quality of microarray data

Eun-kyung Lee 1, Sung-Gon Yi 1, and Taesung Park 1 *

1 Department of Statistics, Seoul National University, Seoul, Korea

* To whom correspondence should be addressed.
Taesung Park, E-mail: tspark{at}stats.snu.ac.kr


  Abstract

Summary: arrayQCplot is a software for the exploratory analysis of microarray data. This software focuses on quality control and generates newly developed plots for quality and reproducibility checks. It is developed using R and provides a user-friendly graphical interface for graphics and statistical analysis. Therefore, novice users will find arrayQCplot as an easy-to-use software for checking the quality of their data by a simple mouse click.

Availability: arrayQCplot software is available from Bioconductor at http://www.bioconductor.org. A more detailed manual is available at http://bibs.snu.ac.kr/software/arrayQCplot.

Associate Editor: Martin Bishop
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A. Kauffmann, R. Gentleman, and W. Huber
arrayQualityMetrics--a bioconductor package for quality assessment of microarray data
Bioinformatics, February 1, 2009; 25(3): 415 - 416.
[Abstract] [Full Text] [PDF]


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