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Bioinformatics Advance Access published online on August 25, 2006
Bioinformatics, doi:10.1093/bioinformatics/btl457
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© The Author (2006). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org
Received March 16, 2006
Revised July 11, 2006
Accepted August 21, 2006

Applications note

ArrayFusion: a web application for multi-dimensional analysis of CGH, SNP and microarray data

Tsun-Po Yang 1, Ting-Yu Chang 2, Chi-Hung Lin 3, Ming-Ta Hsu 4, and Hsei-Wei Wang 3 *

1 Microarray & Gene Expression Analysis Core Facility, VGH National Yang-Ming University Genome Research Center, Taipei, Taiwan
2 Institute of Microbiology and Immunology, National Yang-Ming University, Taipei, Taiwan
3 Microarray & Gene Expression Analysis Core Facility, VGH National Yang-Ming University Genome Research Center, Taipei, Taiwan; Institute of Microbiology and Immunology, National Yang-Ming University, Taipei, Taiwan; Department of Teaching and Research, Taipei City Hospital, Taipei, Taiwan
4 Microarray & Gene Expression Analysis Core Facility, VGH National Yang-Ming University Genome Research Center, Taipei, Taiwan; Institute of Biochemistry and Molecular Biology, National Yang-Ming University, Taipei, Taiwan

* To whom correspondence should be addressed.
Hsei-Wei Wang, E-mail: hwwang{at}ym.edu.tw


  Abstract

Summary: ArrayFusion annotates conventional CGH results and various types of microarray data from a range of platforms (cDNA, expression, exon, SNP, array-CGH and ChIP-on-chip) and converts them into standard formats which can be visualized in genome browsers (AffymetrixTM Integrated Genome Browser and GBrowse in the HapMap Project). Converted files can then be imported simultaneously into a single genome browser to benefit the collective interpretation between different array results. ArrayFusion therefore provides a new type of tool facilitating the integration of CGH and array results to provide new experimental directions.

Availability: http://microarray.ym.edu.tw/tools/arrayfusion.

Associate Editor: Joaquin Dopazo
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