Skip Navigation



Bioinformatics Advance Access published online on August 29, 2006
Bioinformatics, doi:10.1093/bioinformatics/btl461
This Article
Right arrow Advance Access manuscript (PDF) Freely available
Right arrowOA All Versions of this Article:
22/21/2695    most recent
btl461v1
Right arrow Comments: Submit a response
Right arrow Alert me when this article is cited
Right arrow Alert me when Comments are posted
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Google Scholar
Right arrow Articles by Grant, B. J.
Right arrow Articles by Caves, L. S. D.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Grant, B. J.
Right arrow Articles by Caves, L. S. D.
Social Bookmarking
Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

© 2006 The Author(s)
Received July 18, 2006
Revised August 22, 2006
Accepted August 23, 2006

Applications note

Bio3d: an R package for the comparative analysis of protein structures

Barry J. Grant 1 *, Ana P. C. Rodrigues 2, Karim M. ElSawy 3, J. Andrew McCammon 4, and Leo S. D. Caves 3

1 Department of Chemistry & Biochemistry, University of California at San Diego, La Jolla, CA 92093, USA
2 The Burnham Institute for Medical Research, La Jolla, CA 92037, USA
3 Department of Biology, University of York, York YO10 5YW, UK
4 Department of Chemistry & Biochemistry, University of California at San Diego, La Jolla, CA 92093, USA; Howard Hughes Medical Institute

* To whom correspondence should be addressed.
Barry J. Grant, E-mail: bgrant{at}mccammon.ucsd.edu


  Abstract

Summary: An automated procedure for the analysis of homologous protein structures has been developed. The method facilitates the characterization of internal conformational differences and inter-conformer relationships and provides a framework for the analysis of protein structural evolution. The method is implemented in bio3d, an R package for the exploratory analysis of structure and sequence data.

Availability: The bio3d package is distributed with full source code as a platform independent R package under a GPL2 license from: http://mccammon.ucsd.edu/~bgrant/bio3d/.

Associate Editor: Anna Tramontano
Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?




Disclaimer: Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.