Skip Navigation



Bioinformatics Advance Access published online on October 2, 2006
Bioinformatics, doi:10.1093/bioinformatics/btl494
This Article
Right arrow Advance Access manuscript (PDF) Freely available
Right arrow All Versions of this Article:
23/2/240    most recent
btl494v1
Right arrow Comments: Submit a response
Right arrow Alert me when this article is cited
Right arrow Alert me when Comments are posted
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrowRequest Permissions
Google Scholar
Right arrow Articles by You, F. M.
Right arrow Articles by Anderson, O. D.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by You, F. M.
Right arrow Articles by Anderson, O. D.
Social Bookmarking
Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

© The Author (2006). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org
Received April 28, 2006
Revised August 23, 2006
Accepted September 22, 2006

Applications note

GenoProfiler: batch processing of high throughput capillary fingerprinting data

Frank M. You 1 *, Ming-Cheng Luo 1 *, Yong Qiang Gu 2, Gerard R. Lazo 2, Karin Deal 1, Jan Dvorak 1, and Olin D. Anderson 2 *

1 Department of Plant Sciences, University of California, Davis, CA 95616, USA
2 Western Regional Research Center, Agricultural Research Service, US Department of Agriculture, 800 Buchanan Street, Albany, CA 94710, USA

* To whom correspondence should be addressed.
Olin D. Anderson, E-mail: oandersn{at}pw.usda.gov


  Abstract

Summary: High-throughput fingerprinting techniques employing capillary electrophoresis place new demands on the editing of fingerprint files for the downstream contig assembly program, FPC. A cross-platform software application, GenoProfiler, was developed for automated editing of sized fingerprinting profiles generated by the ABI Genetic Analyzers. The batch-processing module extracts the sized fragment information directly from the ABI raw trace files, or from data files exported from GeneMapper or other size calling software, removes the background noise and undesired fragments, and generates fragment size files compatible with the FPC software.

Availability: http://wheat.pw.usda.gov/PhysicalMapping/.

Associate Editor: Keith A Crandall

* The authors contribute equally to this work.


Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?


This article has been cited by other articles:


Home page
 Am. J. Bot.Home page
J. Cavender-Bares and A. Pahlich
Molecular, morphological, and ecological niche differentiation of sympatric sister oak species, Quercus virginiana and Q. geminata (Fagaceae)
Am. J. Botany, September 1, 2009; 96(9): 1690 - 1702.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
W. Nelson and C. Soderlund
Integrating sequence with FPC fingerprint maps
Nucleic Acids Res., April 1, 2009; 37(5): e36 - e36.
[Abstract] [Full Text] [PDF]


Disclaimer: Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.