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Bioinformatics Advance Access published online on November 22, 2006
Bioinformatics, doi:10.1093/bioinformatics/btl593
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© 2006 The Author(s)
Received September 21, 2006
Accepted November 18, 2006

Applications note

SNP2NMD: a database of human SNPs (single nucleotide polymorphisms) causing NMD (nonsense-mediated mRNA decay)

Areum Han 1 {psi}, Woo-Yeon Kim 1 {psi}, and Seong-Min Park 2 *

1 Korean Bioinformation Center, KRIBB, Daejeon 305-806, Korea
2 Korean Bioinformation Center, KRIBB, Daejeon 305-806, Korea; Functional Genomics Research Center, KRIBB, Daejeon 305-806, Korea

* To whom correspondence should be addressed.
Seong-Min Park, E-mail: lastmhc{at}kribb.re.kr


  Abstract

Summary: Elucidating the effects of genetic polymorphisms on genes and gene networks is an important step in disease association studies. We developed the SNP2NMD database for human SNPs (single nucleotide polymorphisms) that result in PTCs (premature termination codons) and trigger nonsense-mediated mRNA decay (NMD). The SNP2NMD Web interfaces provide extensive genetic information on and graphical views of the queried SNP, gene, and disease terms.

Availability: SNP2NMD is available from http://variome.net, or directly from http://bioportal.kobic.re.kr/SNP2NMD.

Supplementary Information: http://bioportal.kobic.re.kr/SNP2NMD/Wiki.jsp?page=Statistics.

Associate Editor: Joaquin Dopazo

{psi}Areum Han and Woo-Yeon Kim contributed equally to this work.


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