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Bioinformatics Advance Access published online on February 18, 2007
Bioinformatics, doi:10.1093/bioinformatics/btm047
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© 2007 The Author(s)
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

ClusterDraw web server: a tool to identify and visualize clusters of binding motifs for transcription factors

Dmitri Papatsenko *

Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720.

*To whom correspondence should be addressed. Dr. Dmitri Papatsenko, E-mail: dxp{at}berkeley.edu


  Abstract

ClusterDraw is a program aimed to identification of binding sites and binding site clusters. Major difference of the ClusterDraw from existing tools is its ability to scan a wide range of parameter values and weigh statistical significance of all possible clusters, smaller than a selected size. The program produces graphs along with decorated FASTA files. ClusterDraw web server is available at the following URL:http://flydev.berkeley.edu/cgi-bin/cld/submit.cgi

Associate Editor: Dr. Alex Bateman

Received on October 25, 2006; revised on January 12, 2007; accepted on February 6, 2007

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